Epidemiological impact of revoking mask-wearing recommendation on COVID-19 transmission in Tokyo, Japan
December 2024
Despite the global implementation of COVID-19 mitigation measures, the disease continues to maintain transmission. Although mask wearing became one of the key measures for preventing the transmission...
A primer on model selection using the Akaike Information Criterion
2020
A powerful investigative tool in biology is to consider not a single mathematical model but a collection of models designed to explore different working hypotheses and select the best model in that...
Transmission of respiratory infectious diseases based on real close contact behavior in an emergency room
December 2025
The risk of transmission of respiratory infectious diseases in emergency rooms is high, posing a severe threat to the health of healthcare workers (HCWs)....
Global infectious disease early warning models: An updated review and lessons from the COVID-19 pandemic
June 2025
An early warning model for infectious diseases is a crucial tool for timely monitoring, prevention, and control of disease outbreaks. The integration of diverse multi-source data using big data and...
Estimating epidemic exponential growth rate and basic reproduction number
2020
The initial exponential growth rate of an epidemic is an important measure of the severeness of the epidemic, and is also closely related to the basic reproduction number. Estimating the growth rate...
A primer on stochastic epidemic models: Formulation, numerical simulation, and analysis
May 2017
Some mathematical methods for formulation and numerical simulation of stochastic epidemic models are presented. Specifically, models are formulated for continuous-time Markov chains and stochastic differential...
To mask or not to mask: Modeling the potential for face mask use by the general public to curtail the COVID-19 pandemic
2020
Face mask use by the general public for limiting the spread of the COVID-19 pandemic is controversial, though increasingly recommended, and the potential of this intervention is not well understood....
Dengue fever prediction based on meteorological features and deep learning models
June 2026
The dengue fever epidemic is one of the health priorities of the World Health Organization (WHO), and accurately predicting its epidemiological trends is crucial. Multi source geographic data such as...
Application of multiple linear regression model and long short-term memory with compartmental model to forecast dengue cases in Selangor, Malaysia based on climate variables
March 2025
Despite the implementation of various initiatives, dengue remains a significant public health concern in Malaysia. Given that dengue has no specific treatment, dengue prediction remains a useful early...
Impact of climate change on dengue fever epidemics in South and Southeast Asian settings: A modelling study
September 2023
The potential for dengue fever epidemic due to climate change remains uncertain in tropical areas. This study aims to assess the impact of climate change on dengue fever transmission in four South and...
A simple modification to the classical SIR model to estimate the proportion of under-reported infections using case studies in flu and COVID-19
December 2024
Under-reporting and, thus, uncertainty around the true incidence of health events is common in all public health reporting systems. While the problem of under-reporting is acknowledged in epidemiology,...
Using statistics and mathematical modelling to understand infectious disease outbreaks: COVID-19 as an example
2020
During an infectious disease outbreak, biases in the data and complexities of the underlying dynamics pose significant challenges in mathematically modelling the outbreak and designing policy. Motivated...
Mathematical modeling of malaria transmission dynamics in humans with mobility and control states
December 2023
Malaria importation is one of the hypothetical drivers of malaria transmission dynamics across the globe. Several studies on malaria importation focused on the effect of the use of conventional malaria...
Reproduction numbers of infectious disease models
August 2017
This primer article focuses on the basic reproduction number, ℛ0, for infectious diseases, and other reproduction numbers related to ℛ0 that are useful in guiding control strategies. Beginning with...
Dynamics and forecasting of an age-structured stochastic SIR model with Lévy perturbations via physics-informed neural networks
June 2026
Understanding and predicting real-world epidemic dynamics has consistently posed a formidable challenge. This study addresses an age-structured stochastic SIR model incorporating a general incidence...
COVID-19, infection fatality rate (IFR) implied by the serology, antibody, testing in New York City
March 2026
This paper estimates COVID-19 infection fatality rate (IFR) in early 2020 before pharmaceutical interventions were available on a large population in the United States. The better estimates of COVID-19...
Spatio-temporal forecasting of dengue in the Americas through hybrid mechanistic and data-driven models: Systematic review and meta-analysis
June 2026
This systematic review and meta-analysis (PROSPERO: CRD420251130769) synthesises 30 dengue modelling studies conducted in the Americas between 2016 and 2025, evaluating the integration of mechanistic...
Impact of the first booster vaccine against SARS-CoV-2 in Chile
June 2026
The present paper proposes a novel methodology for evaluating the impact of a vaccination plan against a transmissible disease. The methodology has two distinct stages. The initial stage comprises a...
Visual preferences for communicating modelling: a global analysis of COVID-19 policy and decision makers
September 2025
Effective communication of modelling results to policy and decision makers has been a longstanding challenge in times of crises. This communication takes many forms - visualisations, reports, presentations...
Impact of human mobility and weather conditions on Dengue mosquito abundance during the COVID-19 pandemic in Hong Kong
September 2025
While Aedes mosquitoes, the Dengue vectors, are expected to expand due to climate change, the impact of human mobility on them is largely unclear. Changes in human mobility, such as staying at home...
Warming temperatures reduce lifespan and vectorial capacity of Anopheles mosquitoes in Ghana
June 2026
Climate change and variability are altering the ecology of malaria vectors, with implications for disease transmission in sub-Saharan Africa. In this study, we analysed long-term historical temperature,...
Regional variations in HIV diagnosis in Japan before and during the COVID-19 pandemic
March 2025
The number of people undergoing voluntary HIV testing has abruptly decreased since 2020. The geographical heterogeneity of HIV infection and the impact of COVID-19 on the diagnosis of HIV at regional...
Modelling the effect of long-lasting insecticidal nets on malaria transmission dynamics in Kebbi State, Nigeria
September 2026
Malaria, in Nigeria, is a disease of public health concern that has caused both morbidity and mortality, with the highest prevalence in Kebbi State. Long-lasting insecticidal nets (LLINs) have been...
A statistical model for forecasting probabilistic epidemic bands for dengue cases in Brazil
December 2025
Dengue is a vector-borne disease and a major public health concern in Brazil. Its continuing and rising burden has led the Brazilian Ministry of Health to request for modelling efforts to aid in the...
Impact of age-structured migration on malaria burden: A modelling-empirical analysis in sub-Saharan Africa
June 2026
Malaria transmission in Sub-Saharan Africa is strongly influenced by seasonal climatic variations and human mobility, particularly occupation-driven rural-to-urban migration. These dynamics contribute...
