Binbin Liu
Junior Editors, Plant Diversity
Institute of Botany, CAS, Beijing, China
Area of expertise: Plant taxonomy, bioinformatics, phylogenomics, machine learning
Institute of Botany, CAS, Beijing, China
Area of expertise: Plant taxonomy, bioinformatics, phylogenomics, machine learning
Title: Associate Researcher
Email: liubinbin@ibcas.ac.cn
Web-link of Research Group: http://www.lseb.cn/rcpy/dsjj/sd/lbb/
Selected publications (no more than 15): # indicates authors contributed equally; * indicates the corresponding author.
Jin ZT#, Ma DK#, Liu GN#, Hodel RGJ, Jiang Y, Ge BJ, Liao S, Duan L, Ren C, Xu C, Wu J*, Liu BB*. 2024. Advancing Pyrus phylogeny: Deep genome skimming-based inference coupled with paralogy analysis yields a robust phylogenetic backbone and an updated infrageneric classification of the pear genus (Maleae, Rosaceae) Taxon. https://doi.org/10.1002/tax.13163
Wang H#, Li XY#, Jiang Y#, Jin ZT, Ma DK, Liu B, Xu C, Ge BJ, Wang T, Fan Q, Jin SH*, Liu GN*, Liu BB*. 2024 Refining the phylogeny and taxonomy of the apple tribe Maleae (Rosaceae): insights from phylogenomic analyses of 563 plastomes and a taxonomic synopsis of Photinia and its allies in the Old World. PhytoKeys 229: 47-60.
Liu GN#, Ma DK#, Zhang Y#, Hodel RGJ, Xie SY, Wang H, Jin ZT, Li FX, Jin SH, Zhao L, Xu C, Wei Y*, Liu BB*. 2023. Phylogenomic analyses support a new infrageneric classification of Pourthiaea (Maleae, Rosaceae) using multiple inference methods and extensive taxon sampling. Taxon 72: 1285-1302.
Jin ZT#, Hodel RGJ#, Ma DK#, Wang H, Liu GN, Ren C, Ge BJ, Fan Q, Jin SH, Xu C, Wu J, Liu BB*. 2023. Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic era. Molecular Phylogenetics and Evolution: 107914.
Xue TT, Janssens SB*, Liu BB*, Yu SX*. 2023. Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sensu lato (Potentilleae, Rosaceae). Molecular Phylogenetics and Evolution: 107956.
Liu BB, Ren C, Kwak M, Hodel RGJ, Xu C, He J, Zhou WB, Huang CH, Ma H, Qian GZ, Hong DY*, Wen J*. 2022. Phylogenomic analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving the diversifications, with insights into the complex biogeographic history in the Northern Hemisphere. Journal of Integrative Plant Biology 64(5): 1020-1043.
Lou YL#, Jin ZT#, Ma DK, Liu BB*. 2022b. A comprehensive checklist of the deciduous photinia genus Pourthiaea (Maleae, Rosaceae), with emphasis on their validity and typification. PhytoKeys 202: 1-33.
Su N#, Liu BB#, Wang JR#, Tong RC, Ren C, Chang ZY, Zhao L*, Potter D, Wen J. 2021. On the species delimitation of the Maddenia group of Prunus (Rosaceae): Evidence from plastome and nuclear sequences and morphology. Frontiers in Plant Science 12: 743643.
Liu BB, Ma ZY, Ren C, Hodel RGJ, Sun M, Liu XQ, Liu GN, Hong DY, Zimmer EA, Wen J*. 2021. Capturing single-copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae. Journal of Systematics and Evolution 59: 1124-1138.
Liu BB#, Liu GN#, Hong DY, Wen J*. 2020a. Eriobotrya belongs to Rhaphiolepis (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data. Frontiers in Plant Science 10: 1731.
Liu BB, Campbell CS, Hong DY, Wen J*. 2020b. Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming. Molecular Phylogenetics and Evolution 147: 106784.
Wang YB#, Liu BB#, Nie ZL, Chen HF, Chen FJ, Figlar RB, Wen J*. 2020. Major clades and a revised classification of Magnolia and Magnoliaceae based on whole plastid genome sequences via genome skimming. Journal of Systematics and Evolution 58(5): 673-695.
Wen J*, Herron SA, Yang X, Liu BB, Zuo Y, Harris AJ, Johnson G, Zimmer EA, Kalburgi Y. 2020. Nuclear and chloroplast sequences resolve the enigmatic origin of the concord grape. Frontiers in Plant Science 11: 263.
Liu BB, Hong DY, Zhou SL, Xu C, Dong WP, Johnson G, Wen J*. 2019. Phylogenomic analyses of the Photinia complex support the recognition of a new genus Phippsiomeles and the resurrection of a redefined Stranvaesia in Maleae (Rosaceae). Journal of Systematics and Evolution 57: 678-694.
Liu BB, Hong DY*. 2017. A taxonomic revision of four complexes in the genus Pourthiaea (Rosaceae). Magnolia Press, Aucland. 1-75. (Monograph)