Yan Yu
Editors, Plant Diversity
Sichuan University, China
Area of expertise: Plant phylogenetics and evolutionary biology
Sichuan University, China
Area of expertise: Plant phylogenetics and evolutionary biology
Title: Professor
Email: yyu@scu.edu.cn
Selected publications:
Song, Y. X., He, H., Zhou, Y. Y., & Yu, Y. (2025). Phylogenomics of the Bupleurum in East Asia: Insights into distribution patterns and diversification. Journal of Systematics and Evolution, 63(5), 1189-1202. doi:doi: 10.1111/jse.13189
Jin, X. J., Yu, Y., Lin, H. Y., Liu, F. L., Wang, H. F., Ma, Q., . . . Li, P. (2025). Revisiting the backbone phylogeny and inferring the evolutionary trends in inflorescence of Elsholtzieae (Lamiaceae): new insights from orthologous nuclear genes. Cladistics, 41(2), 157-176. doi:10.1111/cla.12604
Yu, Y. (2025). Commentary on multimodal profiling identifies CD4+CXCR5+PD-1– Tfh cells as prognostic and predictive biomarkers in diffuse large B-cell lymphoma. Chinese Medical Journal. doi:10.1097/CM9.0000000000003926
Xie, P., Guo, Y., Teng, Y., Zhou, W., & Yu, Y. (2024). GeneMiner: A tool for extracting phylogenetic markers from next-generation sequencing data. Mol Ecol Resour, 24(3), e13924. doi:10.1111/1755-0998.13924
Song, Y. X., Yang, C. Y., Zhou, Y. Y., & Yu, Y. (2024). Speciation and diversification of the Bupleurum (Apiaceae) in East Asia. PhytoKeys, 248, 41-57. doi:10.3897/phytokeys.248.132707
Ma, X.-K., Yu, Y., Huang, T., Zhang, D., Tian, C., Tang, W., . . . Yang, L. (2024). Bioinformatics software development: Principles and future directions. The Innovation Life, 2(3), 100083-100081-100083-100011.
Liu, C., Tang, Z., Li, L., Kang, Y., Teng, Y., & Yu, Y. (2024). Enhancing antimicrobial resistance detection with MetaGeneMiner: Targeted gene extraction from metagenomes. Chinese Medical Journal, 137(17), 2092-2098. doi:10.1097/CM9.0000000000003182
Li, Q. Q., Khasbagan, Zhang, Z. P., Wen, J., & Yu, Y. (2024). Plastid phylogenomics of the tribe potentilleae (Rosaceae). Molecular Phylogenetics and Evolution, 190, 107961. doi:10.1016/j.ympev.2023.107961
Liu, L., Wang, Q., Zhang, Z., He, X., & Yu, Y. (2023). MATO: An updated tool for capturing and analyzing cytotaxonomic and morphological data. The Innovation Life, 1(1), 1-7.
Zhang, Z., Xie, P., Guo, Y., Zhou, W., Liu, E., & Yu, Y. (2022). Easy353: A Tool to Get Angiosperms353 Genes for Phylogenomic Research. Mol Biol Evol, 39(12), msac261. doi:10.1093/molbev/msac261
Zhou, Y.-y., Si, Y.-h., Zhang, Z., Wang, Q., & Yu, Y. (2021). Codonopsis atriplicifolia (Campanulaceae), a new species from western Sichuan, China. Phytotaxa, 512(3), 197–204.
Li, Q. Q., Yu, Y., Zhang, Z. P., & Wen, J. (2021). Comparison among the chloroplast genomes of five species of Chamaerhodos (Rosaceae: Potentilleae): phylogenetic implications. Nordic Journal of Botany, 39(6).
Zhang, Z., Dong, H., Yuan, M., & Yu, Y. (2020). The complete chloroplast genome of Oenanthe javanica. Mitochondrial DNA Part B, 5(3), 3169-3171. doi:10.1080/23802359.2020.1806128
Yu, Y., Blair, C., & He, X. (2020). RASP 4: Ancestral State Reconstruction Tool for Multiple Genes and Characters. Mol Biol Evol, 37(2), 604-606. doi:10.1093/molbev/msz257
Wen, J., Yu, Y., Xie, D., Peng, C., Liu, Q., Zhou, S., & He, X. (2020). A transcriptome-based study on the phylogeny and evolution for taxonomic controversial subfamily Apioideae (Apiaceae). Ann Bot, 125(6), 937-953. doi:10.1093/aob/mcaa011