Ziwen He
Editors, Plant Diversity
Sun Yat-sen University, China
Area of expertise: Evolutionary biology, molecular ecology, population genetics, genomics
Sun Yat-sen University, China
Area of expertise: Evolutionary biology, molecular ecology, population genetics, genomics
Title: Professor, Ph.D.
Email: heziwen@mail.sysu.edu.cn
Selected publications:
Shaohua Xu, Shao Shao, Xiao Feng, Sen Li, Lingjie Zhang, Weihong Wu, Min Liu, Miles E. Tracy, Cairong Zhong, Zixiao Guo, Chung-I Wu, Suhua Shi, Ziwen He. Adaptation in unstable environments and global gene losses: small but stable gene networks by the May–Wigner theory. Molecular Biology and Evolution, 2024, 41(4):msae059.
Xiao Feng, Qipian Chen, Weihong Wu, Jiexin Wang, Guohong Li, Shaohua Xu, Shao Shao, Min Liu, Cairong Zhong, Chung-I Wu, Suhua Shi, Ziwen He. Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication. Nature Communications, 2024, 15:1635.
Weihong Wu, Xiao Feng, Nan Wang, Shao Shao, Min Liu, Fa Si, Linhao Chen, Chuanfeng Jin, Shaohua Xu, Zixiao Guo, Cairong Zhong, Suhua Shi, Ziwen He. Genomic analysis of Nypa fruticans elucidates its intertidal adaptations and early palm evolution. Journal of Integrative Plant Biology, 2024, 66(4):824-843.
Yuan Wang, Yulong Li, Weihong Wu, Shao Shao, Qi Fang, Shaohua Xu, Zixiao Guo, Suhua Shi, Ziwen He. The evolution history of an allotetraploid mangrove tree analysed with a new tool Allo4D. Plant Biotechnology Journal, 2023, doi:10.1111/pbi.14281.
Xiao Feng, Guohong Li, Weihong Wu, Haomin Lyu, Jiexin Wang, Cong Liu, Cairong Zhong, Suhua Shi, Ziwen He. Expansion and adaptive evolution of the WRKY transcription factor family in Avicennia mangrove trees. Marine Life Science & Technology, 2023, 5(2):155-168.
Shaohua Xu, Zixiao Guo, Xiao Feng, Shao Shao, Yuchen Yang, Jianfang Li, Cairong Zhong, Ziwen He, Suhua Shi. Where whole-genome duplication is most beneficial: Adaptation of mangroves to a wide salinity range between land and sea. Molecular Ecology, 2023, 32(2):460-475.
Ziwen He, Xiao Feng, Qipian Chen, Liangwei Li, Sen Li, Kai Han, Zixiao Guo, Jiayan Wang, Min Liu, Chengcheng Shi, Shaohua Xu, Shao Shao, Xin Liu, Xiaomeng Mao, Wei Xie, Xinfeng Wang, Rufan Zhang, Guohong Li, Weihong Wu, Zheng Zheng, Cairong Zhong, Norman C. Duke, David E. Boufford, Guangyi Fan, Chung-I Wu, Robert E. Ricklefs, Suhua Shi. Evolution of coastal forests based on a full set of mangrove genomes. Nature Ecology & Evolution, 2022, 6(6):738-749.
Qipian Chen, Hao Yang, Xiao Feng, Qingjian Chen, Suhua Shi, Chung-I Wu, Ziwen He. Two decades of suspect evidence for adaptive molecular evolution – Negative selection confounding positive selection signals. National Science Review, 2022, 9(5):nwab217.
Xiao Feng, Guohong Li, Shaohua Xu, Weihong Wu, Qipian Chen, Shao Shao, Min Liu, Nan Wang, Cairong Zhong, Ziwen He, Suhua Shi. Genomic insights into molecular adaptation to intertidal environments in the mangrove Aegiceras corniculatum. New Phytologist, 2021, 231:2346-2358.
Shaohua Xu, Jiayan Wang, Zixiao Guo, Ziwen He, Suhua Shi. Genomic convergence in the adaptation to extreme environments. Plant Communications, 2020, 1(6):100117.
Ziwen He, Shaohua Xu, Zhang Zhang, Wuxia Guo, Haomin Lyu, Cairong Zhong, David E Boufford, Norman C Duke, The International Mangrove Consortium, Suhua Shi. Convergent adaptation of the genomes of woody plants at the land–sea interface. National Science Review, 2020, 7(6):978-993.
Ziwen He, Shaohua Xu, Suhua Shi. Adaptive convergence at the genomic level—prevalent, uncommon or very rare? National Science Review, 2020, 7(6):947-951.
Ziwen He, Xinnian Li, Ming Yang, Xinfeng Wang, Cairong Zhong, Norman C Duke, Chung-I Wu, Suhua Shi. Speciation with gene flow via cycles of isolation and migration: Insights from multiple mangrove taxa. National Science Review, 2019, 6(2):275-288.
Ziwen He, Xinnian Li, Shaoping Ling, Yun-Xin Fu, Eric Hungate, Suhua Shi, Chung-I Wu. Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications. BMC Genomics, 2013, 14(1):535.
Ziwen He, Weiwei Zhai, Haijun Wen, Tian Tang, Yu Wang, Xuemei Lu, Anthony J. Greenberg, Richard R. Hudson, Chung-I Wu, Suhua Shi. Two evolutionary histories in the genome of rice: the roles of domestication genes. PLoS Genetics, 2011, 7(6):e1002100.